Compiled matlab - cannot allocate memory
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Written on: 07. 08. 2012 [15:47]
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hhoffmann
Holger Hoffmann
Topic creator
registered since: 21.12.2011
Posts: 30
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Hi, I just got this abort, running a compiled matlab routine: ----------------------------------------------------- Job ran on: tane-n022.rrzn.uni-hannover.de /var/spool/torque/mom_priv/jobs/605019-1722.batch.rrzn.uni-hannover.de.SC: fork: Cannot allocate memory ----------------------------------------------------- Job ran on Tuesday 7-8-2012, 15:41 and was speciefied as #PBS -l walltime=00:10:00 #PBS -l mem=1gb #PBS -t 1501-1736 Any idea what "Cannot allocate memory" means? Kind regards, Holger |
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Written on: 15. 08. 2012 [10:25]
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hhoffmann
Holger Hoffmann
Topic creator
registered since: 21.12.2011
Posts: 30
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Hi, the problem was solved as follows: ------------------------------------------------------------- #!/bin/bash -login #PBS -N biascorr_CLM #PBS -M hoffmann  bgt.uni-hannover[dot]de#PBS -m a #PBS -j oe #PBS -l nodes=1:ppn=1 #PBS -l walltime=00:10:00 #PBS -l mem=10gb #PBS -t 1-1736 # show which computer the job ran on echo "Job ran on:" $(hostname) # change to work dir: cd $PBS_O_WORKDIR RUN='CLM' #PBS -v RUN # log file name LOGFILE=$(echo $PBS_JOBID | cut -d"." -f1).log #Setup MCR cache directory locally export MCR_CACHE_ROOT=/tmp/mcr_cache_$PBS_JOBID mkdir -p $MCR_CACHE_ROOT # the program to run /home/nhpghoff/biascorr/distrib/run_biascorr.sh /sw/aws/numerics/matlab/MATLAB_R2012a &> $LOGFILE #Remove temporary MCR cache directory /bin/rm -rf $MCR_CACHE_ROOT ----------------------------------------------------------- following this link: http://cac.engin.umich.edu/resources/software/mcc.html best regards, holger [This article was edited 1 times, at last 15.08.2012 at 10:26.] |
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